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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 281

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 515 118

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 414 74

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 436 79

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 371 54

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 219 16

Repositories

Showing 10 of 279 repositories
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Nov 8, 2026
  • spatialdata-db-client Public
    theislab/spatialdata-db-client's past year of commit activity
    Python 3 BSD-3-Clause 0 2 1 Updated Nov 8, 2026
  • cellucid Public

    See every cell. Query any gene. Fly through millions, right in your browser.

    theislab/cellucid's past year of commit activity
    JavaScript 8 BSD-3-Clause 0 0 0 Updated Nov 7, 2026
  • cellucid-r Public

    Cellucid for R. From Seurat to millions of cells in your browser, in one command.

    theislab/cellucid-r's past year of commit activity
    R 0 0 0 0 Updated Nov 7, 2026
  • cellucid-python Public

    Cellucid for Python. From AnnData to millions of cells in your browser, in one command.

    theislab/cellucid-python's past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated Nov 7, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata's past year of commit activity
    Python 15 Apache-2.0 7 3 1 Updated Nov 7, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 371 Apache-2.0 54 5 1 Updated Nov 7, 2026
  • Chem-PerturBridge_analysis Public
    theislab/Chem-PerturBridge_analysis's past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Nov 6, 2026
  • 2025_cpmeasure_for_spatial Public
    theislab/2025_cpmeasure_for_spatial's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 6, 2026
  • cellucid-datasets Public

    Cellucid demo datasets. Real single-cell data, one click from exploring.

    theislab/cellucid-datasets's past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 6, 2026
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