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Allergen and antigen modules for the ten proteome runs; third aggregate report - #163
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…te report Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
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What
analysis/sorting_hat_run/aga1_allergen_antigen_modules.py: local BLASTP of each proteome against the 111 IUIS fungal allergen sequences (options ofblast_allergen.sbatch),allergenandantigenmodules (antigennot_applicableoutside taxon 246410), engine re-run into a new folder.GN=CIMG_field of the UniProt headers (9,442 of 9,712 map), because the HPCCprotein_map.tsvof the older record is keyed on RefSeq IDs. This is a different ID route; the PR says so in the record README.docs/reports/data/aga1_aggregate_allergen_antigen_2026-10-26/: antigen rank 153.7 per 1,000 in C. immitis (top 15%), NA elsewhere (not applicable);iuis_allergen_similarity8.8 to 13.9 per 1,000;iuis_allergen_homologstays not assessable (no active allergen Pfam family, issue Future category: fungal allergen sub-database (Alternaria and relatives) #19).Checks
Test of the protein map and the chunk merging; ruff 0.3.5 clean. No HPCC access, nothing submitted.
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