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Cross-proteome aggregator and first aggregate report on ten proteomes (plan WP 5-6; stacked on #160) - #161
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…able tables, report and figures; guard for mostly-not-assessable cells Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…GENTS entries Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
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What
cellsurface_sorting_hat_aggregate: reads several engine runs, groups proteomes by NCBI rank (defaultclass) or a group table, writesproteomes.tsv,counts_by_proteome.tsv,counts_by_group.tsv, a Markdown report and three deterministic PNGs.--measured-only; cells with under half the proteins assessable are flaggedlow_assessableand left out of group summaries (this removes thetandem_repeat_proteinartefact caused by the missingrepeat02table).docs/reports/data/aga1_aggregate_2026-10-26/(README lists hashes and limits).docs/TECHNICAL-NOTES.md,AGENTS.mdupdated.Checks
tests/cellsurface_sorting_hat1271 passed, 9 skipped; ruff 0.3.5 format and check clean.Not done
Pfam/TMHMM/repeat02 module tables (seven calls are NA), orthogroups/diversity/duplication, interactive page, hand-check verdicts and per-clade recalibration.
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