Issues

• Time course with automatic step size fails with 'TCRIT behind TOUT' after a time event

  copasi/basico#89 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Time course from a negative initial time fails with 'Internal step limit exceeded' at an output time shortly after an event at t = 0

  copasi/basico#88 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Python bindings: no access to the states of the roots of the event triggers

  copasi/basico#87 · Filter by author matthiaskoenig opened on Nov 4, 2026

• An event never fires when its trigger is exactly at its threshold where LSODA starts or restarts

  copasi/basico#86 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Continuing a time course one or two ulp before a pending delayed event fails with 'TOUT too close to T'

  copasi/basico#85 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Time course with automatic step size fails with 'TCRIT behind TCUR' on a delayed event

  copasi/basico#84 · Filter by author matthiaskoenig opened on Nov 4, 2026

• SBML import succeeds on a model with a libsbml error and reports the error as a RAW message

  copasi/basico#83 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Conversion factors are ignored in a time course after SBML import: the adapted stoichiometries are not compiled

  copasi/basico#82 · Filter by author matthiaskoenig opened on Nov 4, 2026

• A CDataHandler used directly as the output handler of a time course reports stale values

  copasi/basico#81 · Filter by author matthiaskoenig opened on Nov 4, 2026

• CTrajectoryProblem.setValues(FloatStdVector) rounds the output times to 6 significant digits

  copasi/basico#80 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Python bindings: FloatVector has no element setter, so CMathContainer.setState/setValues cannot be used with new values

  copasi/basico#79 · Filter by author matthiaskoenig opened on Nov 4, 2026

• import COPASI sets the locale of the python process to C, text files then fail to decode

  copasi/basico#78 · Filter by author matthiaskoenig opened on Nov 4, 2026

• Time course results differ in the last bits between two loads of the same SBML model

  copasi/basico#77 · Filter by author matthiaskoenig opened on Nov 4, 2026
  1

• SBML import crashes (segmentation fault) on a parameter with units and a truncated distrib distribution

  copasi/basico#76 · Filter by author matthiaskoenig opened on Nov 3, 2026
  2

• basico returns wrong labels for the jacobian if user order is different

  copasi/basico#75 · Filter by author fbergmann opened on Oct 9, 2026

• support validation data

  copasi/basico#74 · Filter by author fbergmann opened on Jun 11, 2026
  

• Bug: biomodels search_for_model() function returns max 100 results

  bug
  Bug

  copasi/basico#71 · Filter by author lilijap opened on Aug 5, 2025
  6

  

• Bug: obtaining models from jws online db

  bug
  Bug

  copasi/basico#70 · Filter by author lilijap opened on Aug 5, 2025
  4

  

• Specify syntax for parameter expressions

  copasi/basico#64 · Filter by author yusufozgur opened on Jan 21, 2025

• issue with display names

  copasi/basico#59 · Filter by author fbergmann opened on Sep 27, 2024
  1

• Inconsistency between COPASI UI parameter estimation and basico parameter estimation

  question
  copasi/basico#55 · Filter by author Theo-BRN opened on Jun 14, 2024
  3

• Custom time values with get_simulation_results()

  copasi/basico#54 · Filter by author Theo-BRN opened on Jun 5, 2024
  5

• Simultaneous Parameter Estimation

  copasi/basico#50 · Filter by author Theo-BRN opened on Apr 18, 2024
  5

• does basico use threading?

  copasi/basico#32 · Filter by author syedzayyan opened on May 11, 2023
  1

• Plots of steady-state experiments

  copasi/basico#23 · Filter by author DeepaMahm opened on Jun 23, 2022
  3