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Bump the all-julia-packages group across 5 directories with 4 updates - #2905

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Bump the all-julia-packages group across 5 directories with 4 updates#2905
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This update adds <0.0.1 to standard library compat entries. Before Julia 1.10, Pkg.test() gave standard libraries version 0.0.0, so while the julia compat entry admits those releases, a stdlib compat entry needs <0.0.1 for tests to resolve. Raising the julia compat entry to 1.10 or later removes the need for it. See the stdlib compat PSA.

Updates the requirements on DocStringExtensions, Turing, Test and Logging to permit the latest version.
Updates DocStringExtensions to 0.10.0

Release notes

Sourced from DocStringExtensions's releases.

v0.10.0

DocStringExtensions v0.10.0

Diff since v0.9.5

See https://github.com/JuliaDocs/DocStringExtensions.jl/blob/master/CHANGELOG.md for a list of changes.

Merged pull requests:

... (truncated)

Changelog

Sourced from DocStringExtensions's changelog.

v0.10.0 - 2026-10-14

Breaking

  • @template rejects a category no docstring belongs to, such as a misspelled name, with an ArgumentError. It used to store a template that never applied, so a package with such a category now fails to precompile until the category is corrected or removed (#223)
  • @template throws an ArgumentError for a template string without $(DOCSTRING), including a plain string literal, when the template is defined. Some of these templates used to load and fail with a MethodError only when Julia displayed a docstring. A package that defines one now fails to precompile (#151)
  • More docstrings get a template, and some get a different one. A docstring now gets its template when it sits in the same begin block as the @template (#288), documents a bare existing name such as "..." f (#291), or documents a parametric type's constructor (#226). A method defined through a const alias gets METHODS where it got CONSTANTS (#289). A function named like a macro, such as var"@f", no longer gets MACROS (#263). Bindings documented together each get their own category's template (#210). Where a docstring repeats by hand what its template prints, the text now appears twice

Added

  • Add TYPEDMETHODLIST, which lists methods like METHODLIST but with argument and return types. TypedMethodList(returns = false) leaves out the return types (#150, #197)
  • Add TypedMethodSignatures(returns = false), which renders typed signatures without return types (#159, #179)
  • Add a returns option to MethodSignatures and MethodList that follows each signature with its inferred return type. MethodSignatures and TypedMethodSignatures also take a string, such as returns = "success::Bool", which they print after -> in place of the inferred type (#206, #246)
  • Add the DOCSTRINGEXTENSIONS_RETURN_ARROW and DOCSTRINGEXTENSIONS_SIGNATURE_WIDTH environment variables. A reader sets them to change the arrow before return types, such as to →, and the width at which a signature wraps to one argument per line, 60 by default (#252, #267)
  • Add a defaults = true option to MethodSignatures and TypedMethodSignatures that prints default argument values, with the methods generated for positional defaults collapsed into one signature (#19, #107, #194)
  • Add a defaults = :brackets option to MethodSignatures and TypedMethodSignatures. It prints the collapsed signature without default values. Each optional positional argument appears in brackets. Any other symbol passed as defaults throws an ArgumentError (#206, #247)
  • Add PUBLIC to list a module's public names, both exported and declared public (#190)
  • Add INSTANCES to list the instances of an enum with their values. It supports @enum and EnumX.jl's @enumx (#171)
  • Add SUBTYPES to list the direct subtypes of a type as links. It lists only subtypes defined in the type's own module or a module inside it (#47, #154, #227)
  • Add BODY to print the body of the documented method definition as a Julia code block (#54, #237)
  • Add NOTEMPLATE, which stops a module's @template applying to the docstring it appears in. TemplateOverride(category) applies the template for another category instead (#158, #240)
  • Add the ABSTRACTTYPES template category for abstract types. A module without one documents abstract types with its TYPES template, as before (#147, #241)
  • SIGNATURES and TYPEDSIGNATURES in the docstring of a macro print it as its caller writes it, such as @m a b. The __source__ and __module__ arguments and the inferred return type are left out. They printed nothing before. METHODLIST and TYPEDMETHODLIST list a macro the same way. For a vararg macro they printed its hidden arguments, and for any other macro nothing (#262)
  • SIGNATURES and TYPEDSIGNATURES in the docstring of a struct list the constructors its definition creates. They printed nothing before (#71, #245)
  • Declare the interface for writing an abbreviation public on Julia 1.11 and later: Abbreviation, format and interpolation. A new guide covers it (#86, #303)
  • Declare the types that take abbreviation options public on Julia 1.11 and later, such as MethodSignatures and TypeFields. Each one appears on its topic's reference page (#303)
  • Add TypeFields(; types, defaults), whose keywords match the other option types (#303)

Changed

  • Signatures leave out a return type inferred as Any, as they already did for Nothing. -> Any says only that inference could not work out the type (#301, #298)
  • The manual splits into Examples and Reference sections with one page per topic. Each example page prints its source above the rendered docstrings, and new pages cover PUBLIC, INSTANCES, and @template with DOCSTRING. The package docstring is rewritten. A Setup page covers adding the package, templates, and Documenter. The docstrings of the package, @template and every abbreviation except README and LICENSE carry examples as doctests, which the docs build checks against the real output. They replace hand-written samples that had drifted from it (#122, #215)
  • SIGNATURES prints an unnamed argument with a declared type as ::T, as TYPEDSIGNATURES does, so foo(::Val{N}) no longer prints as foo(_). An untyped unnamed argument still prints as _ (#161, #235)
  • TYPEDSIGNATURES and TYPEDMETHODLIST print the declared type of each keyword argument, such as f(x; n::Int64). An untyped keyword and a kwargs... keyword print without one (#97, #244)
  • FIELDS and TYPEDFIELDS print each field's default value, such as retries::Int64 = 3, for structs defined with Base.@kwdef or a macro that uses the same syntax. TypeFields(defaults = false) hides them (#182, #245)
  • @template applies a template when its docstring is defined, not when it is displayed, so a templated docstring no longer stores the documented expression in the package image. A docstring for a binding that does not exist yet keeps its template until display. Bindings documented together, such as @doc "..." (f, T), each get the template for their own category, where they all used the last binding's (#210)

Deprecated

  • TypeFields(types::Bool) is deprecated in favour of TypeFields(types = ...) (#303)

Fixed

  • Fix inferred return types printing the names inference gives the type parameters it cannot work out, such as -> Pair{_A, Int} where _A. They print as their bound, -> Pair{<:Any, Int}, on Julia 1.3 and later (#300, #297)
  • Fix TYPEDSIGNATURES leaving out the return type of a callable such as (e::E)(x) and of a constructor written T{P}(...). Before Julia 1.6 they still print without one (#279, #296)
  • Fix a wrapped signature with only keyword arguments printing ; alone on its own line. It prints f(; on the first line. A signature without arguments no longer wraps, so a long return type follows f() (#281, #295)
  • Fix METHODLIST and TYPEDMETHODLIST in a parametric type's docstring leaving out the constructors written T{P}(...) (#280, #294)
  • Fix signatures printing a where bound that names another type parameter with Array{T, 1} where the source writes Vector{T}, such as S<:Vector{T} (#278, #293)
  • Fix a world-age warning on Julia 1.12 and later when @template and a docstring expand together from running code, such as in one macroexpand call. Under --depwarn=error the docstring lost its template (#277, #292)
  • Fix @template skipping a docstring on a bare existing name, such as "..." f after function f end. The dotted form "..." M.f already got its template (#276, #291)

... (truncated)

Commits

Updates Turing to 0.49.0

Release notes

Sourced from Turing's releases.

v0.49.0

Turing v0.49.0

Diff since v0.48.0

DynamicPPL 0.42.13 is now the minimum, so that SMC, PG and CSMC build a TapedTask again (#2895).

Breaking changes

NamedDist is no longer re-exported, following its removal from DynamicPPL. Replace x ~ NamedDist(dist, :y) with y ~ dist, followed by x = y if a local alias is needed (#2895).

Merged pull requests:

Changelog

Sourced from Turing's changelog.

0.49.0

DynamicPPL 0.42.13 is now the minimum, so that SMC, PG and CSMC build a TapedTask again (#2895).

Breaking changes

NamedDist is no longer re-exported, following its removal from DynamicPPL. Replace x ~ NamedDist(dist, :y) with y ~ dist, followed by x = y if a local alias is needed (#2895).

0.48.0

Breaking changes

The SGLD and SGHMC samplers, which did not support minibatching, have been removed along with PolynomialStepsize (#2890).

MH(var => proposal, ...) and LinkedRW have been removed. Use MH() for prior proposals, or MH(cov_matrix) for a Gaussian random walk over the complete linked parameter vector. In Gibbs, assign MH(cov_matrix) to the target variable block (#2883).

Gibbs now conditions its components with DynamicPPL.condition. GibbsContext and Turing.Inference.make_conditional are removed. Rename isgibbscomponent to supports_gibbs and gibbs_get_raw_values to gibbs_get_parameter_values; the old names are deprecated. Gibbs no longer supports model arguments containing missing: declare the latent variable inside the model and condition on observations instead (#2863).

Every variable reached by a Gibbs model must belong to a component. A component may not change the dimension or existence of a variable owned only by another component; put the variable and whatever decides its shape in one block. Changes to another block's support or distributional form remain unchecked and can make the chain reducible; see the Gibbs docstring (#2863).

Other changes

ESS Gibbs components now use the current conditional prior after another component changes its parameters (#2885).

Gibbs chains now include component-sampler statistics (#2863).

NUTS and HMCDA now accept a NamedTuple or Dict{VarName} initial_params, which HMC already did (#2878).

Emcee now honours chain_type=MCMCChains.Chains, and refuses walkers that start in different parameter layouts instead of failing inside the decode or the stretch proposal (#2879).

estimate_mode now represents indexed bounds using the model's parameter shapes, avoiding growable-array warnings during optimisation (#2888).

estimate_mode now throws on a bound that does not cover a whole variable, where it previously either dropped it and returned the unconstrained mode or failed with a bare DimensionMismatch, and warns on a bound no variable can use rather than ignoring it in silence (#2880).

Prior() now warns that initial_params has no effect instead of discarding it silently (#2881).

... (truncated)

Commits
  • 9d78370 Drop the NamedDist re-export and require DynamicPPL 0.42.13 (#2895)
  • b8af3d0 Fix Gibbs handling of wrapped external samplers and conditional sites (#2891)
  • 8e6474e Remove SGLD and SGHMC (#2890)
  • 0427d59 docs: clarify README (#2889)
  • 230890a Gibbs: condition components instead of GibbsContext (#2863)
  • 9c52f65 optimisation: eliminate growable constraint warnings (#2888)
  • afeec14 mh: remove per-variable proposals (#2883)
  • 41a8c37 optimisation: Stop silently discarding lb/ub bounds (#2880)
  • b1f8d57 emcee: Honour chain_type and refuse walkers in different parameter layouts ...
  • 4528262 prior: Warn that initial_params has no effect (#2881)
  • Additional commits viewable in compare view

Updates Test to

Updates Logging to

Updates Test to

Updates Test to

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@dependabot
Bump the all-julia-packages group across 5 directories with 4 updates
78baecc 
Updates the requirements on [DocStringExtensions](https://github.com/JuliaDocs/DocStringExtensions.jl), [Turing](https://github.com/TuringLang/Turing.jl), Test and Logging to permit the latest version.

Updates `DocStringExtensions` to 0.10.0
- [Release notes](https://github.com/JuliaDocs/DocStringExtensions.jl/releases)
- [Changelog](https://github.com/JuliaDocs/DocStringExtensions.jl/blob/master/CHANGELOG.md)
- [Commits](https://github.com/JuliaDocs/DocStringExtensions.jl/commits/v0.10.0)

Updates `Turing` to 0.49.0
- [Release notes](https://github.com/TuringLang/Turing.jl/releases)
- [Changelog](https://github.com/TuringLang/Turing.jl/blob/main/HISTORY.md)
- [Commits](v0.0.1...v0.49.0)

Updates `Test` to 

Updates `Logging` to 

Updates `Test` to 

Updates `Test` to 

---
updated-dependencies:
- dependency-name: DocStringExtensions
  dependency-version: 0.10.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Turing
  dependency-version: 0.49.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Test
  dependency-version:
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Logging
  dependency-version:
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Test
  dependency-version:
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Test
  dependency-version:
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Oct 19, 2026
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Turing.jl documentation for PR #2905 is available at:
https://TuringLang.github.io/Turing.jl/previews/PR2905/

@dependabot @github

dependabot Bot commented on behalf of github Oct 26, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Oct 26, 2026
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dependabot Bot deleted the dependabot/julia/all-julia-packages-4e32819444 branch October 26, 2026 22:05
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