Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-dynamic-foraging-bfm-atlas Public
Interactive, provenance-traced browser for aind-dynamic-foraging-bfm-studies reports
- aind-dynamic-foraging-bfm-studies Public
Scientific studies of the dynamic-foraging-bfm stack: one folder per question, with launch records, frozen inputs, analysis and reports. Extracted with full history from aind-dynamic-foraging-bfm-dispatcher.
- aind-fip-dff Public
This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
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- package-brain-atlas-assets Public
Reorganize various brain atlas data assets into a standard organization and metadata convention.
- aind-z1-camera-alignment Public
Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets
- dynamic-foraging-processing Public
A library for processing dynamic foraging behavior data acquired on the new acquisition standard
- allen-asset-creation-library Public
Code that can be used to create an automation capsule for Code Ocean pipelines